HL_4U27_160

3D structure

PDB id

4U27 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to flopristin and linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

4U27|1|DA|U|958, 4U27|1|DA|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U27_160 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1617

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4U27|1|DA|U|955
4U27|1|DA|G|956
4U27|1|DA|C|957
4U27|1|DA|U|958
4U27|1|DA|A|959
4U27|1|DA|A|960
4U27|1|DA|C|961
4U27|1|DA|G|962

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DM

50S ribosomal protein L16