HL_4U3M_007

3D structure

PDB id

4U3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Anisomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

4U3M|1|1|G|218, 4U3M|1|1|A|219, 4U3M|1|1|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U3M_007 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.0478

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

4U3M|1|1|G|216
4U3M|1|1|U|217
4U3M|1|1|G|218
4U3M|1|1|A|219
4U3M|1|1|G|220
4U3M|1|1|A|221
4U3M|1|1|A|222
4U3M|1|1|U|223
4U3M|1|1|C|224

Current chains

Chain 1

25s rRNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain L4

60S ribosomal protein L4-A

Chain N6

60S ribosomal protein L26-A