3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GUGAGAAUC
Length
9 nucleotides
Bulged bases
4U3M|1|1|G|218, 4U3M|1|1|A|219, 4U3M|1|1|G|220
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4U3M_007 not in the Motif Atlas
Homologous match to HL_5TBW_007
Geometric discrepancy: 0.0478
The information below is about HL_5TBW_007
Detailed Annotation
T-loop with unstacked turn
Broad Annotation
T-loop
Motif group
HL_08002.12
Basepair signature
cWW-cWW-F-tWH
Number of instances in this motif group
16

Unit IDs

4U3M|1|1|G|216
4U3M|1|1|U|217
4U3M|1|1|G|218
4U3M|1|1|A|219
4U3M|1|1|G|220
4U3M|1|1|A|221
4U3M|1|1|A|222
4U3M|1|1|U|223
4U3M|1|1|C|224

Current chains

Chain 1
25s rRNA

Nearby chains

Chain 4
5.8S ribosomal RNA; 5.8S rRNA
Chain L4
60S ribosomal protein L4-A
Chain N6
60S ribosomal protein L26-A

Coloring options:


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