3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AGCAGAAU
Length
8 nucleotides
Bulged bases
4U3M|1|1|G|2898
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4U3M_063 not in the Motif Atlas
Homologous match to HL_5TBW_062
Geometric discrepancy: 0.0524
The information below is about HL_5TBW_062
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_79150.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
12

Unit IDs

4U3M|1|1|A|2897
4U3M|1|1|G|2898
4U3M|1|1|C|2899
4U3M|1|1|A|2900
4U3M|1|1|G|2901
4U3M|1|1|A|2902
4U3M|1|1|A|2903
4U3M|1|1|U|2904

Current chains

Chain 1
25s rRNA

Nearby chains

Chain L9
60S ribosomal protein L9-A
Chain Q0
Ubiquitin-60S ribosomal protein L40

Coloring options:


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