3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CUGAACGCCUCUAAG
Length
15 nucleotides
Bulged bases
4U3M|1|5|G|3116, 4U3M|1|5|C|3120
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4U3M_181 not in the Motif Atlas
Homologous match to HL_5TBW_067
Geometric discrepancy: 0.0675
The information below is about HL_5TBW_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_56677.9
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

4U3M|1|5|C|3110
4U3M|1|5|U|3111
4U3M|1|5|G|3112
4U3M|1|5|A|3113
4U3M|1|5|A|3114
4U3M|1|5|C|3115
4U3M|1|5|G|3116
4U3M|1|5|C|3117
4U3M|1|5|C|3118
4U3M|1|5|U|3119
4U3M|1|5|C|3120
4U3M|1|5|U|3121
4U3M|1|5|A|3122
4U3M|1|5|A|3123
4U3M|1|5|G|3124

Current chains

Chain 5
25s rRNA

Nearby chains

Chain l9
60S ribosomal protein L9-A
Chain m6
60S ribosomal protein L16-A
Chain q0
Ubiquitin-60S ribosomal protein L40

Coloring options:


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