3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GAUCAGAUACC
Length
11 nucleotides
Bulged bases
4U3M|1|6|U|1004
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4U3M_207 not in the Motif Atlas
Homologous match to HL_4V88_208
Geometric discrepancy: 0.0587
The information below is about HL_4V88_208
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.2
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
14

Unit IDs

4U3M|1|6|G|997
4U3M|1|6|A|998
4U3M|1|6|U|999
4U3M|1|6|C|1000
4U3M|1|6|A|1001
4U3M|1|6|G|1002
4U3M|1|6|A|1003
4U3M|1|6|U|1004
4U3M|1|6|A|1005
4U3M|1|6|C|1006
4U3M|1|6|C|1007

Current chains

Chain 6
18S rRNA

Nearby chains

Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain c4
40S ribosomal protein S14-A
Chain d6
40S ribosomal protein S26-B

Coloring options:


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