HL_4U3M_236

3D structure

PDB id

4U3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Anisomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

4U3M|1|5|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U3M_236 not in the Motif Atlas

Homologous match to HL_8P9A_139

Geometric discrepancy: 0.1524

The information below is about HL_8P9A_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4U3M|1|5|C|1239
4U3M|1|5|A|1240
4U3M|1|5|U|1241
4U3M|1|5|G|1242
4U3M|1|5|G|1243
4U3M|1|5|A|1244
4U3M|1|5|A|1245
4U3M|1|5|G|1246
4U3M|1|5|U|1247
4U3M|1|5|C|1248
4U3M|1|5|G|1249

Current chains

Chain 5

25s rRNA

Nearby chains

Chain m2

UNKNOWN PROTEIN m2