HL_4U3N_107

3D structure

PDB id

4U3N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U3N_107 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3727

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

4U3N|1|2|C|1683
4U3N|1|2|U|1684
4U3N|1|2|G|1685
4U3N|1|2|G|1717
4U3N|1|2|G|1718

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A