HL_4U3U_049

3D structure

PDB id

4U3U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cycloheximide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

4U3U|1|1|A|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U3U_049 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.0407

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4U3U|1|1|G|2253
4U3U|1|1|U|2254
4U3U|1|1|A|2255
4U3U|1|1|A|2256
4U3U|1|1|C|2257
4U3U|1|1|U|2258
4U3U|1|1|A|2259
4U3U|1|1|U|2260
4U3U|1|1|G|2261
4U3U|1|1|A|2262
4U3U|1|1|C|2263

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain E0

40S ribosomal protein S30-A