HL_4U3U_136

3D structure

PDB id

4U3U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cycloheximide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCGAAAUGA

Length

9 nucleotides

Bulged bases

4U3U|1|5|A|1025, 4U3U|1|5|U|1028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U3U_136 not in the Motif Atlas

Geometric match to HL_8H9D_001

Geometric discrepancy: 0.1433

The information below is about HL_8H9D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.1

Basepair signature

cWW-F

Number of instances in this motif group

8

Unit IDs

4U3U|1|5|U|1022
4U3U|1|5|C|1023
4U3U|1|5|G|1024
4U3U|1|5|A|1025
4U3U|1|5|A|1026
4U3U|1|5|A|1027
4U3U|1|5|U|1028
4U3U|1|5|G|1029
4U3U|1|5|A|1030

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain e1

Ubiquitin-40S ribosomal protein S31

Chain m1

60S ribosomal protein L11-B

Chain sM

Suppressor protein STM1