HL_4U3U_221

3D structure

PDB id

4U3U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cycloheximide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AAGGGGGCAACUCCAU

Length

16 nucleotides

Bulged bases

4U3U|1|6|C|1700

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U3U_221 not in the Motif Atlas

Geometric match to HL_8KAL_003

Geometric discrepancy: 0.3881

The information below is about HL_8KAL_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4U3U|1|6|A|1693
4U3U|1|6|A|1694
4U3U|1|6|G|1695
4U3U|1|6|G|1696
4U3U|1|6|G|1697
4U3U|1|6|G|1698
4U3U|1|6|G|1699
4U3U|1|6|C|1700
4U3U|1|6|A|1701
4U3U|1|6|A|1702
4U3U|1|6|C|1703
4U3U|1|6|U|1704
4U3U|1|6|C|1705
4U3U|1|6|C|1706
4U3U|1|6|A|1707
4U3U|1|6|U|1708

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain s6

40S ribosomal protein S6-A