3D structure

PDB id
4U3U (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Cycloheximide bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
AAGGGGGCAACUCCAU
Length
16 nucleotides
Bulged bases
4U3U|1|6|C|1700
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4U3U_221 not in the Motif Atlas
Geometric match to HL_8KAL_003
Geometric discrepancy: 0.3881
The information below is about HL_8KAL_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.5
Basepair signature
cWW-F
Number of instances in this motif group
19

Unit IDs

4U3U|1|6|A|1693
4U3U|1|6|A|1694
4U3U|1|6|G|1695
4U3U|1|6|G|1696
4U3U|1|6|G|1697
4U3U|1|6|G|1698
4U3U|1|6|G|1699
4U3U|1|6|C|1700
4U3U|1|6|A|1701
4U3U|1|6|A|1702
4U3U|1|6|C|1703
4U3U|1|6|U|1704
4U3U|1|6|C|1705
4U3U|1|6|C|1706
4U3U|1|6|A|1707
4U3U|1|6|U|1708

Current chains

Chain 6
18S ribosomal RNA

Nearby chains

Chain s6
40S ribosomal protein S6-A

Coloring options:


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