3D structure

PDB id
4U3U (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Cycloheximide bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
UUGCCUCGGUAA
Length
12 nucleotides
Bulged bases
4U3U|1|1|U|545, 4U3U|1|1|C|546
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4U3U_228 not in the Motif Atlas
Geometric match to HL_5TBW_226
Geometric discrepancy: 0.101
The information below is about HL_5TBW_226
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_59342.2
Basepair signature
cWW-F-F-F-F-cWW-F-F
Number of instances in this motif group
5

Unit IDs

4U3U|1|1|U|540
4U3U|1|1|U|541
4U3U|1|1|G|542
4U3U|1|1|C|543
4U3U|1|1|C|544
4U3U|1|1|U|545
4U3U|1|1|C|546
4U3U|1|1|G|547
4U3U|1|1|G|548
4U3U|1|1|U|549
4U3U|1|1|A|550
4U3U|1|1|A|551

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain N0
60S ribosomal protein L20-A

Coloring options:


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