HL_4U3U_229

3D structure

PDB id

4U3U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cycloheximide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAGUGUGUAACAACUC

Length

16 nucleotides

Bulged bases

4U3U|1|1|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U3U_229 not in the Motif Atlas

Geometric match to HL_5TBW_227

Geometric discrepancy: 0.0681

The information below is about HL_5TBW_227

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02373.2

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4U3U|1|1|G|1262
4U3U|1|1|A|1263
4U3U|1|1|G|1264
4U3U|1|1|U|1265
4U3U|1|1|G|1266
4U3U|1|1|U|1267
4U3U|1|1|G|1268
4U3U|1|1|U|1269
4U3U|1|1|A|1270
4U3U|1|1|A|1271
4U3U|1|1|C|1272
4U3U|1|1|A|1273
4U3U|1|1|A|1274
4U3U|1|1|C|1275
4U3U|1|1|U|1276
4U3U|1|1|C|1277

Current chains

Chain 1

25S ribosomal RNA

Nearby chains