Motif HL_02373.2 Version HL_02373.2 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-3 | 2-13 | 3-11 | 3-12 | 3-13 | 4-10 | 4-11 | 4-12 | 5-9 | 5-12 | 6-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6ZDU_005 | 6ZDU | 0.8617 | 5 | C | Chains: C,D | C | 1268 | U | 1269 | U | 1270 | C | 1271 | C | 1272 | C | 1273 | G | 1274 | G | 1279 | G | 1281 | G | 1282 | A | 1283 | U | 1284 | A | 1285 | G | 1286 | cWW | ncWW | ncWW | ncWW | ncWH | |||||||
| 2 | HL_2ANN_001 | 2ANN | 0.0000 | 3 | B | RNA (25-mer) | C | 5 | G | 6 | G | 7 | A | 8 | U | 9 | C | 10 | A | 11 | A | 15 | C | 16 | C | 17 | C | 18 | A | 19 | A | 20 | G | 21 | cWW | tSH | tSH | ncBW | ||||||||
| 3 | HL_5TBW_227 | 5TBW | 0.9044 | 2 | 1 | LSU rRNA | G | 1262 | G | 1264 | U | 1265 | G | 1266 | U | 1267 | G | 1268 | U | 1269 | A | 1271 | C | 1272 | A | 1273 | A | 1274 | C | 1275 | U | 1276 | C | 1277 | cWW | ncSH | cWw | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUCCCGAAUUGUGGAUAG | 1 |
| CGGAUCAGUCACCCAAG | 1 |
| GAGUGUGUAACAACUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCCCGAAUUGUGGAUA | 1 |
| GGAUCAGUCACCCAA | 1 |
| AGUGUGUAACAACU | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.86 | Avg 0.60 | Max 0.91
Coloring options: