HL_4U3U_239

3D structure

PDB id

4U3U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cycloheximide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAUUCAUUUUC

Length

12 nucleotides

Bulged bases

4U3U|1|5|A|2540

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U3U_239 not in the Motif Atlas

Geometric match to HL_3TUP_001

Geometric discrepancy: 0.3757

The information below is about HL_3TUP_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

4U3U|1|5|G|2534
4U3U|1|5|A|2535
4U3U|1|5|A|2536
4U3U|1|5|U|2537
4U3U|1|5|U|2538
4U3U|1|5|C|2539
4U3U|1|5|A|2540
4U3U|1|5|U|2541
4U3U|1|5|U|2542
4U3U|1|5|U|2543
4U3U|1|5|U|2544
4U3U|1|5|C|2545

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l8

60S ribosomal protein L8-A

Chain o4

60S ribosomal protein L34-A

Chain s1

40S ribosomal protein S1-A