HL_4U4O_038

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

4U4O|1|1|U|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U4O_038 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.2028

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4U4O|1|1|C|1759
4U4O|1|1|A|1760
4U4O|1|1|C|1761
4U4O|1|1|C|1762
4U4O|1|1|U|1763
4U4O|1|1|U|1764
4U4O|1|1|U|1765
4U4O|1|1|G|1766

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M9

60S ribosomal protein L19-A

Chain N2

60S ribosomal protein L22-A