HL_4U4O_124

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U4O_124 not in the Motif Atlas

Geometric match to HL_6DME_002

Geometric discrepancy: 0.2666

The information below is about HL_6DME_002

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

4U4O|1|5|C|543
4U4O|1|5|C|544
4U4O|1|5|U|545
4U4O|1|5|C|546
4U4O|1|5|G|547
4U4O|1|5|G|548

Current chains

Chain 5

25S ribosomal RNA

Nearby chains