HL_4U4O_139
3D structure
- PDB id
- 4U4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Geneticin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- CAUGGAAGUCG
- Length
- 11 nucleotides
- Bulged bases
- 4U4O|1|5|A|1245
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4U4O_139 not in the Motif Atlas
- Homologous match to HL_8C3A_027
- Geometric discrepancy: 0.3717
- The information below is about HL_8C3A_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19210.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
4U4O|1|5|C|1239
4U4O|1|5|A|1240
4U4O|1|5|U|1241
4U4O|1|5|G|1242
4U4O|1|5|G|1243
4U4O|1|5|A|1244
4U4O|1|5|A|1245
4U4O|1|5|G|1246
4U4O|1|5|U|1247
4U4O|1|5|C|1248
4U4O|1|5|G|1249
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain m2
- unknown protein chain m2
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