Motif HL_19210.1 Version HL_19210.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_027 | 5TBW | 0.5974 | 1 | 1 | LSU rRNA | C | 1239 | A | 1240 | U | 1241 | G | 1242 | G | 1243 | A | 1244 | G | 1246 | U | 1247 | C | 1248 | G | 1249 | cWW | |
| 2 | HL_5J7L_161 | 5J7L | 0.1617 | 1 | DA | LSU rRNA | C | 1064 | U | 1065 | U | 1066 | A | 1067 | G | 1068 | A | 1069 | G | 1071 | C | 1072 | A | 1073 | G | 1074 | cWW | |
| 3 | HL_6PRV_001 | 6PRV | 0.0735 | 1 | A | LSU rRNA | C | 1064 | U | 1065 | U | 1066 | A | 1067 | G | 1068 | A | 1069 | G | 1071 | C | 1072 | A | 1073 | G | 1074 | cWW | |
| 4 | HL_1MMS_001 | 1MMS | 0.0000 | 1 | C | 23S RIBOSOMAL RNA | C | 1064 | U | 1065 | U | 1066 | A | 1067 | G | 1068 | A | 1069 | G | 1071 | C | 1072 | A | 1073 | G | 1074 | cWW | |
| 5 | HL_5D8H_001 | 5D8H | 0.0661 | 1 | A | LSU rRNA | C | 1174 | U | 1175 | U | 1176 | A | 1177 | G | 1178 | A | 1179 | G | 1181 | C | 1182 | A | 1183 | G | 1184 | cWW | |
| 6 | HL_8C3A_027 | 8C3A | 0.3121 | 1 | 1 | LSU rRNA | C | 1235 | A | 1236 | U | 1237 | G | 1238 | G | 1239 | A | 1240 | G | 1242 | U | 1243 | C | 1244 | G | 1245 | cWW | cWWa |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUAGAAGCAG | 4 |
| CAUGGAAGUCG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAGAAGCA | 4 |
| AUGGAAGUC | 2 |
- Annotations
-
- (6)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.28 | Max 0.63
Coloring options: