HL_4U4O_146

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UUUUA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U4O_146 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3516

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4U4O|1|5|U|1567
4U4O|1|5|U|1568
4U4O|1|5|U|1569
4U4O|1|5|U|1570
4U4O|1|5|A|1571

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA