HL_4U4R_129
3D structure
- PDB id
- 4U4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Lactimidomycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UGAAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4U4R_129 not in the Motif Atlas
- Homologous match to HL_5TBW_016
- Geometric discrepancy: 0.0635
- The information below is about HL_5TBW_016
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
4U4R|1|5|U|707
4U4R|1|5|G|708
4U4R|1|5|A|709
4U4R|1|5|A|710
4U4R|1|5|A|711
4U4R|1|5|G|712
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain m3
- 60S ribosomal protein L13-A
- Chain m8
- 60S ribosomal protein L18-A
- Chain n8
- 60S ribosomal protein L28
- Chain o6
- 60S ribosomal protein L36-A
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