HL_4U4R_140
3D structure
- PDB id
- 4U4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Lactimidomycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CAUGGAAGUCG
- Length
- 11 nucleotides
- Bulged bases
- 4U4R|1|5|A|1245
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4U4R_140 not in the Motif Atlas
- Homologous match to HL_8P9A_139
- Geometric discrepancy: 0.15
- The information below is about HL_8P9A_139
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19210.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
4U4R|1|5|C|1239
4U4R|1|5|A|1240
4U4R|1|5|U|1241
4U4R|1|5|G|1242
4U4R|1|5|G|1243
4U4R|1|5|A|1244
4U4R|1|5|A|1245
4U4R|1|5|G|1246
4U4R|1|5|U|1247
4U4R|1|5|C|1248
4U4R|1|5|G|1249
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain m2
- Unknown protein m2
Coloring options: