HL_4U4U_199

3D structure

PDB id

4U4U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lycorine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

4U4U|1|6|U|493, 4U4U|1|6|U|494, 4U4U|1|6|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U4U_199 not in the Motif Atlas

Homologous match to HL_4V88_198

Geometric discrepancy: 0.1337

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4U4U|1|6|C|491
4U4U|1|6|A|492
4U4U|1|6|U|493
4U4U|1|6|U|494
4U4U|1|6|C|495
4U4U|1|6|G|496

Current chains

Chain 6

18S ribosomal RNA

Nearby chains