HL_4U4U_222
3D structure
- PDB id
- 4U4U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Lycorine bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AGAAGGGGGCAACUCCAUCU
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4U4U_222 not in the Motif Atlas
- Geometric match to HL_8C3A_054
- Geometric discrepancy: 0.3614
- The information below is about HL_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
4U4U|1|6|A|1691
4U4U|1|6|G|1692
4U4U|1|6|A|1693
4U4U|1|6|A|1694
4U4U|1|6|G|1695
4U4U|1|6|G|1696
4U4U|1|6|G|1697
4U4U|1|6|G|1698
4U4U|1|6|G|1699
4U4U|1|6|C|1700
4U4U|1|6|A|1701
4U4U|1|6|A|1702
4U4U|1|6|C|1703
4U4U|1|6|U|1704
4U4U|1|6|C|1705
4U4U|1|6|C|1706
4U4U|1|6|A|1707
4U4U|1|6|U|1708
4U4U|1|6|C|1709
4U4U|1|6|U|1710
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain n4
- 60S ribosomal protein L24-A
- Chain s6
- 40S ribosomal protein S6-A
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