HL_4U4Y_084

3D structure

PDB id

4U4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

4U4Y|1|2|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U4Y_084 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3392

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4U4Y|1|2|C|491
4U4Y|1|2|A|492
4U4Y|1|2|U|493
4U4Y|1|2|U|494
4U4Y|1|2|C|495
4U4Y|1|2|G|496

Current chains

Chain 2

18S ribosomal RNA

Nearby chains