HL_4U4Y_093

3D structure

PDB id

4U4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

4U4Y|1|2|U|1004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U4Y_093 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.121

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

4U4Y|1|2|G|997
4U4Y|1|2|A|998
4U4Y|1|2|U|999
4U4Y|1|2|C|1000
4U4Y|1|2|A|1001
4U4Y|1|2|G|1002
4U4Y|1|2|A|1003
4U4Y|1|2|U|1004
4U4Y|1|2|A|1005
4U4Y|1|2|C|1006
4U4Y|1|2|C|1007

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain C4

40S ribosomal protein S14-A

Chain D6

40S ribosomal protein S26-B