HL_4U4Y_182

3D structure

PDB id

4U4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U4Y_182 not in the Motif Atlas

Homologous match to HL_5TBW_069

Geometric discrepancy: 0.2123

The information below is about HL_5TBW_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4U4Y|1|5|C|3240
4U4Y|1|5|G|3241
4U4Y|1|5|G|3242
4U4Y|1|5|A|3243
4U4Y|1|5|A|3244
4U4Y|1|5|A|3245
4U4Y|1|5|G|3246
4U4Y|1|5|G|3247

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l3

60S ribosomal protein L3

Chain m6

60S ribosomal protein L16-A