HL_4U4Y_226

3D structure

PDB id

4U4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUGCCUCGGUAA

Length

12 nucleotides

Bulged bases

4U4Y|1|1|U|545, 4U4Y|1|1|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U4Y_226 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.1203

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

4U4Y|1|1|U|540
4U4Y|1|1|U|541
4U4Y|1|1|G|542
4U4Y|1|1|C|543
4U4Y|1|1|C|544
4U4Y|1|1|U|545
4U4Y|1|1|C|546
4U4Y|1|1|G|547
4U4Y|1|1|G|548
4U4Y|1|1|U|549
4U4Y|1|1|A|550
4U4Y|1|1|A|551

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain N0

60S ribosomal protein L20-A