3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UUCAGUGUG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4U50_059 not in the Motif Atlas
Homologous match to HL_5TBW_058
Geometric discrepancy: 0.076
The information below is about HL_5TBW_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_34636.1
Basepair signature
cWW-cWW-F-F-F-F-F
Number of instances in this motif group
3

Unit IDs

4U50|1|1|U|2724
4U50|1|1|U|2725
4U50|1|1|C|2726
4U50|1|1|A|2727
4U50|1|1|G|2728
4U50|1|1|U|2729
4U50|1|1|G|2730
4U50|1|1|U|2731
4U50|1|1|G|2732

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain M8
60S ribosomal protein L18-A
Chain N1
60S ribosomal protein L21-A
Chain N8
60S ribosomal protein L28
Chain Q2
60S ribosomal protein L42-A

Coloring options:


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