3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGGAAUUUG
Length
9 nucleotides
Bulged bases
4U50|1|1|G|2777
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4U50_061 not in the Motif Atlas
Homologous match to HL_5TBW_060
Geometric discrepancy: 0.0809
The information below is about HL_5TBW_060
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_93324.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
26

Unit IDs

4U50|1|1|C|2776
4U50|1|1|G|2777
4U50|1|1|G|2778
4U50|1|1|A|2779
4U50|1|1|A|2780
4U50|1|1|U|2781
4U50|1|1|U|2782
4U50|1|1|U|2783
4U50|1|1|G|2784

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain M3
60S ribosomal protein L13-A
Chain N8
60S ribosomal protein L28
Chain O6
60S ribosomal protein L36-A
Chain Q2
60S ribosomal protein L42-A

Coloring options:


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