3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GUGAGAAUC
Length
9 nucleotides
Bulged bases
4U50|1|5|G|218, 4U50|1|5|A|219, 4U50|1|5|G|220
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4U50_120 not in the Motif Atlas
Homologous match to HL_5TBW_007
Geometric discrepancy: 0.0669
The information below is about HL_5TBW_007
Detailed Annotation
T-loop with unstacked turn
Broad Annotation
T-loop
Motif group
HL_08002.12
Basepair signature
cWW-cWW-F-tWH
Number of instances in this motif group
16

Unit IDs

4U50|1|5|G|216
4U50|1|5|U|217
4U50|1|5|G|218
4U50|1|5|A|219
4U50|1|5|G|220
4U50|1|5|A|221
4U50|1|5|A|222
4U50|1|5|U|223
4U50|1|5|C|224

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain l4
60S ribosomal protein L4-A
Chain n6
60S ribosomal protein L26-A

Coloring options:


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