HL_4U51_104

3D structure

PDB id

4U51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Narciclasine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U51_104 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.128

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4U51|1|2|C|1501
4U51|1|2|G|1502
4U51|1|2|A|1503
4U51|1|2|G|1504
4U51|1|2|A|1505
4U51|1|2|G|1506

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C5

40S ribosomal protein S15

Chain C8

40S ribosomal protein S18-A

Chain C9

40S ribosomal protein S19-A