HL_4U51_238

3D structure

PDB id

4U51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Narciclasine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U51_238 not in the Motif Atlas

Homologous match to HL_8P9A_150

Geometric discrepancy: 0.5545

The information below is about HL_8P9A_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25967.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4U51|1|5|C|1759
4U51|1|5|A|1760
4U51|1|5|C|1761
4U51|1|5|C|1762
4U51|1|5|U|1763
4U51|1|5|U|1764
4U51|1|5|U|1765
4U51|1|5|G|1766

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m9

60S ribosomal protein L19-A

Chain n2

60S ribosomal protein L22-A

Chain n5

60S ribosomal protein L25