HL_4U52_016

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U52_016 not in the Motif Atlas

Homologous match to HL_5TBW_016

Geometric discrepancy: 0.0363

The information below is about HL_5TBW_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4U52|1|1|U|707
4U52|1|1|G|708
4U52|1|1|A|709
4U52|1|1|A|710
4U52|1|1|A|711
4U52|1|1|G|712

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M3

60S ribosomal protein L13-A

Chain M8

60S ribosomal protein L18-A

Chain N8

60S ribosomal protein L28

Chain O6

60S ribosomal protein L36-A