HL_4U52_021

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

4U52|1|1|A|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U52_021 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.0483

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4U52|1|1|G|910
4U52|1|1|C|911
4U52|1|1|G|912
4U52|1|1|A|913
4U52|1|1|A|914
4U52|1|1|A|915
4U52|1|1|G|916
4U52|1|1|A|917
4U52|1|1|C|918

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L2

60S ribosomal protein L2-A

Chain M5

60S ribosomal protein L15-A

Chain O7

60S ribosomal protein L37-A