HL_4U52_052
3D structure
- PDB id
- 4U52 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Nagilactone C bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GAGACAUAGUUUC
- Length
- 13 nucleotides
- Bulged bases
- 4U52|1|1|U|2501
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4U52_052 not in the Motif Atlas
- Geometric match to HL_8KAH_003
- Geometric discrepancy: 0.3278
- The information below is about HL_8KAH_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89457.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4U52|1|1|G|2440
4U52|1|1|A|2441
4U52|1|1|G|2442
4U52|1|1|A|2443
4U52|1|1|C|2444
4U52|1|1|A|2445
4U52|1|1|U|2501
4U52|1|1|A|2502
4U52|1|1|G|2503
4U52|1|1|U|2504
4U52|1|1|U|2505
4U52|1|1|U|2506
4U52|1|1|C|2507
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain O6
- 60S ribosomal protein L36-A
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