HL_4U52_094

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

4U52|1|2|U|1057

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U52_094 not in the Motif Atlas

Homologous match to HL_8P9A_212

Geometric discrepancy: 0.5429

The information below is about HL_8P9A_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97917.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4U52|1|2|U|1055
4U52|1|2|U|1056
4U52|1|2|U|1057
4U52|1|2|U|1058
4U52|1|2|U|1059
4U52|1|2|U|1060
4U52|1|2|A|1061
4U52|1|2|A|1062
4U52|1|2|U|1063
4U52|1|2|G|1064

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C7

40S ribosomal protein S17-A

Chain D7

40S ribosomal protein S27-A

Chain S1

40S ribosomal protein S1-A