Motif HL_61768.1 Version HL_61768.1 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4PQV_003 | 4PQV | 0.6411 | 1 | A | Flavivirus 3' UTR stem loop IV | G | 57 | G | 58 | G | 60 | G | 61 | A | 62 | C | 63 | cWW | tSH |
| 2 | HL_3OIN_001 | 3OIN | 0.0000 | 2 | C | RNA (14-mer) | C | 4 | U | 5 | A | 8 | A | 9 | C | 10 | G | 11 | cWW | |
| 3 | HL_8P9A_212 | 8P9A | 0.7804 | 4 | sR | SSU rRNA | U | 1055 | U | 1056 | A | 1061 | A | 1062 | U | 1063 | G | 1064 | cWW | ncwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAGGAC | 1 |
| CUUCAACG | 1 |
| UUUUUUAAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAGGA | 1 |
| UUCAAC | 1 |
| UUUUUAAU | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.64 | Avg 0.50 | Max 0.82
Coloring options: