HL_4U52_116

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

4U52|1|5|U|133, 4U52|1|5|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U52_116 not in the Motif Atlas

Homologous match to HL_8C3A_004

Geometric discrepancy: 0.1956

The information below is about HL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

4U52|1|5|C|132
4U52|1|5|U|133
4U52|1|5|U|134
4U52|1|5|C|135
4U52|1|5|G|136

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m5

60S ribosomal protein L15-A

Chain o5

60S ribosomal protein L35-A