Motif HL_86929.1 Version HL_86929.1 of this group appears in releases 3.89 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8VM9_005 | 8VM9 | 0.2930 | 2 | R | RNA (85-MER) | C | 34 | U | 36 | G | 38 | cWW |
| 2 | HL_8VTW_051 | 8VTW | 0.2576 | 3 | 1A | LSU rRNA | C | 2205 | A | 2208 | G | 2219 | cWW |
| 3 | HL_5TBW_004 | 5TBW | 0.2082 | 2 | 1 | LSU rRNA | C | 132 | U | 134 | G | 136 | cWW |
| 4 | HL_8C3A_004 | 8C3A | 0.2214 | 2 | 1 | LSU rRNA | C | 131 | U | 133 | G | 135 | cWW |
| 5 | HL_8VM8_002 | 8VM8 | 0.2003 | 2 | R | RNA (93-MER) | C | 39 | U | 41 | G | 43 | cWW |
| 6 | HL_5CCB_002 | 5CCB | 0.1692 | 2 | N | tRNA | U | 33 | U | 35 | A | 37 | cWW |
| 7 | HL_2UWM_002 | 2UWM | 0.1076 | 1 | D | RNA (23-mer) | G | 22 | U | 24 | C | 25 | cWW |
| 8 | HL_6U8D_003 | 6U8D | 0.0000 | 1 | A | JIIIabc RNA (68-MER) | C | 232 | U | 234 | G | 235 | cWW |
| 9 | HL_6M0X_002 | 6M0X | 0.1119 | 1 | B | RNA (71-MER) | U | 56 | C | 58 | A | 59 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUUG | 2 |
| CGGAUG | 1 |
| CUUCG | 1 |
| CUUUG | 1 |
| UUUUA | 1 |
| GGUC | 1 |
| CGUG | 1 |
| UUCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUU | 2 |
| UUU | 2 |
| GU | 2 |
| GGAU | 1 |
| UUC | 1 |
| UC | 1 |
Release history
| Release | 3.89 |
|---|---|
| Date | 2024-10-09 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: