HL_4U52_140

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

4U52|1|5|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U52_140 not in the Motif Atlas

Homologous match to HL_8P9A_139

Geometric discrepancy: 0.1849

The information below is about HL_8P9A_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4U52|1|5|C|1239
4U52|1|5|A|1240
4U52|1|5|U|1241
4U52|1|5|G|1242
4U52|1|5|G|1243
4U52|1|5|A|1244
4U52|1|5|A|1245
4U52|1|5|G|1246
4U52|1|5|U|1247
4U52|1|5|C|1248
4U52|1|5|G|1249

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m2

Unknown Protein m2