HL_4U52_164

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

4U52|1|5|A|2372, 4U52|1|5|A|2373, 4U52|1|5|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U52_164 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.0535

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

4U52|1|5|G|2369
4U52|1|5|G|2370
4U52|1|5|G|2371
4U52|1|5|A|2372
4U52|1|5|A|2373
4U52|1|5|C|2374
4U52|1|5|G|2375
4U52|1|5|G|2376
4U52|1|5|G|2377
4U52|1|5|C|2378

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l3

60S ribosomal protein L3

Chain o2

60S ribosomal protein L32