HL_4U52_219
3D structure
- PDB id
- 4U52 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Nagilactone C bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AUUGUAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 4U52|1|6|A|1559
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4U52_219 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.0698
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
4U52|1|6|A|1550
4U52|1|6|U|1551
4U52|1|6|U|1552
4U52|1|6|G|1553
4U52|1|6|U|1554
4U52|1|6|A|1555
4U52|1|6|A|1556
4U52|1|6|U|1557
4U52|1|6|U|1558
4U52|1|6|A|1559
4U52|1|6|U|1560
4U52|1|6|U|1561
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c5
- 40S ribosomal protein S15
- Chain c8
- 40S ribosomal protein S18-A
- Chain c9
- 40S ribosomal protein S19-A
- Chain d9
- 40S ribosomal protein S29-A
- Chain sM
- Suppressor protein STM1
Coloring options: