HL_4U53_191

3D structure

PDB id

4U53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4U53|1|6|U|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U53_191 not in the Motif Atlas

Homologous match to HL_8P9A_194

Geometric discrepancy: 0.3475

The information below is about HL_8P9A_194

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

4U53|1|6|C|230
4U53|1|6|U|231
4U53|1|6|U|232
4U53|1|6|C|233
4U53|1|6|G|234
4U53|1|6|G|235

Current chains

Chain 6

18S ribosomal RNA

Nearby chains