HL_4U53_230

3D structure

PDB id

4U53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAGUGUGUAACAACUC

Length

16 nucleotides

Bulged bases

4U53|1|1|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U53_230 not in the Motif Atlas

Geometric match to HL_5TBW_227

Geometric discrepancy: 0.0911

The information below is about HL_5TBW_227

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02373.2

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4U53|1|1|G|1262
4U53|1|1|A|1263
4U53|1|1|G|1264
4U53|1|1|U|1265
4U53|1|1|G|1266
4U53|1|1|U|1267
4U53|1|1|G|1268
4U53|1|1|U|1269
4U53|1|1|A|1270
4U53|1|1|A|1271
4U53|1|1|C|1272
4U53|1|1|A|1273
4U53|1|1|A|1274
4U53|1|1|C|1275
4U53|1|1|U|1276
4U53|1|1|C|1277

Current chains

Chain 1

25S ribosomal RNA

Nearby chains