HL_4U55_094

3D structure

PDB id

4U55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cryptopleurine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

4U55|1|2|U|1004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U55_094 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.1256

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

4U55|1|2|G|997
4U55|1|2|A|998
4U55|1|2|U|999
4U55|1|2|C|1000
4U55|1|2|A|1001
4U55|1|2|G|1002
4U55|1|2|A|1003
4U55|1|2|U|1004
4U55|1|2|A|1005
4U55|1|2|C|1006
4U55|1|2|C|1007

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain C4

40S ribosomal protein S14-A