HL_4U55_120
3D structure
- PDB id
- 4U55 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Cryptopleurine bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- 4U55|1|5|G|218, 4U55|1|5|A|219, 4U55|1|5|G|220
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4U55_120 not in the Motif Atlas
- Homologous match to HL_5TBW_007
- Geometric discrepancy: 0.067
- The information below is about HL_5TBW_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
4U55|1|5|G|216
4U55|1|5|U|217
4U55|1|5|G|218
4U55|1|5|A|219
4U55|1|5|G|220
4U55|1|5|A|221
4U55|1|5|A|222
4U55|1|5|U|223
4U55|1|5|C|224
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain l4
- 60S ribosomal protein L4-A
- Chain n6
- 60S ribosomal protein L26-A
Coloring options: