HL_4U56_138
3D structure
- PDB id
- 4U56 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Blasticidin S bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- UCGAAAUGA
- Length
- 9 nucleotides
- Bulged bases
- 4U56|1|5|A|1025, 4U56|1|5|U|1028
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4U56_138 not in the Motif Atlas
- Geometric match to HL_8H9D_001
- Geometric discrepancy: 0.2067
- The information below is about HL_8H9D_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69752.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 8
Unit IDs
4U56|1|5|U|1022
4U56|1|5|C|1023
4U56|1|5|G|1024
4U56|1|5|A|1025
4U56|1|5|A|1026
4U56|1|5|A|1027
4U56|1|5|U|1028
4U56|1|5|G|1029
4U56|1|5|A|1030
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain c5
- 40S ribosomal protein S15
- Chain e1
- Ubiquitin-40S ribosomal protein S31
- Chain m1
- 60S ribosomal protein L11-B
- Chain sM
- Suppressor protein STM1
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