HL_4U56_192

3D structure

PDB id

4U56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Blasticidin S bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4U56|1|6|U|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U56_192 not in the Motif Atlas

Homologous match to HL_8P9A_194

Geometric discrepancy: 0.3994

The information below is about HL_8P9A_194

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

4U56|1|6|C|230
4U56|1|6|U|231
4U56|1|6|U|232
4U56|1|6|C|233
4U56|1|6|G|234
4U56|1|6|G|235

Current chains

Chain 6

18S ribosomal RNA

Nearby chains