HL_4U56_204

3D structure

PDB id

4U56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Blasticidin S bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GUCCUUGUGGC

Length

11 nucleotides

Bulged bases

4U56|1|6|U|718

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U56_204 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.2944

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

4U56|1|6|G|714
4U56|1|6|U|715
4U56|1|6|C|716
4U56|1|6|C|717
4U56|1|6|U|718
4U56|1|6|U|719
4U56|1|6|G|720
4U56|1|6|U|721
4U56|1|6|G|722
4U56|1|6|G|723
4U56|1|6|C|724

Current chains

Chain 6

18S ribosomal RNA

Nearby chains