HL_4U56_231
3D structure
- PDB id
- 4U56 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Blasticidin S bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- UUGCCUCGGUAA
- Length
- 12 nucleotides
- Bulged bases
- 4U56|1|1|U|545, 4U56|1|1|C|546
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4U56_231 not in the Motif Atlas
- Geometric match to HL_5TBW_226
- Geometric discrepancy: 0.126
- The information below is about HL_5TBW_226
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_59342.2
- Basepair signature
- cWW-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
4U56|1|1|U|540
4U56|1|1|U|541
4U56|1|1|G|542
4U56|1|1|C|543
4U56|1|1|C|544
4U56|1|1|U|545
4U56|1|1|C|546
4U56|1|1|G|547
4U56|1|1|G|548
4U56|1|1|U|549
4U56|1|1|A|550
4U56|1|1|A|551
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain N0
- 60S ribosomal protein L20-A
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